CodeBoarding Analysis - ProteinFlow
Details
Component Overview: ProteinFlow Data Core
Protein Data Models
This component defines the fundamental Python classes that represent protein structures and their associated data. It includes base classes for general protein entries and specialized classes for specific types of protein data, such as PDB entries and SAbDab entries (antibody-antigen complexes). These models encapsulate attributes like atomic coordinates, amino acid sequences, chain information, and metadata.
Related Classes/Methods:
`proteinflow.data.PDBEntry` (1:1)`proteinflow.data.SAbDabEntry` (1:1)`proteinflow.data.ProteinEntry` (1:1)`proteinflow/data/__init__.py` (1:1)`proteinflow/data/utils.py` (1:1)
Data Ingestion and Utilities
This component provides the functionalities for reading, parsing, and processing raw protein data from various file formats (e.g., PDB files, pickle files) into the Protein Data Models. It also includes utility functions for data validation, cleaning, and basic manipulation, ensuring that the data is correctly formatted and ready for further analysis or use by other components.